Clinica is a software platform for clinical neuroscience research studies, i.e. studies involving patients with neurological and psychiatric diseases, using multimodal data (neuroimaging, clinical and cognitive evaluations, genetics...) and most often longitudinal follow-up.
Clinica is developed by the ARAMIS Lab at the ICM in Paris.
Neuroimaging data analysis:
• Anatomical MRI
• Diffusion MRI
• PET
• more modalities soon to come!
Statistical analysis
Machine learning
Data management made easy:
• Standardized data structures for inputs
• Standardized data structures for outputs
• Conversion of data sets
Clinica is written in Python.
It uses the Nipype system for pipelining. It combines widely-used software for neuroimaging data analysis (SPM, FreeSurfer, FSL, MRtrix, ...), machine learning (Scikit-learn) and the BIDS standard for data organization.
In short: to make your life easier.
Specifically, Clinica provides:
• complex processing pipelines involving combination of different analysis software
• integration between feature extraction and statistics/machine learning
• standardized file organization
This should help you to:
• easily share data and results within your institution and with external collaborators
• make your research more reproducible
• spend less time on data management and processing
• Project coordinator
• Co-founder
• Co-founder
• Software Architecture
• Optimizations
• Command-line System
• Test / Benchmarks / Profiling
• Atlas-based measurements
• Machine learning
• Data converters (AIBL)
• PET data analysis
• Test / Benchmarks / Profiling
• Project management
• Documentation
• I/O
• Data converters (ADNI, AIBL, OASIS)
• Data structure specifications
• Approximation of white matter bundles (future release)
• Software Architecture
• Optimizations
• Functional MRI analysis
• Diffusion MRI analysis
• Atlas-based measurements
• Genetic data analysis (future release)
• Machine learning
• PET data analysis
• Test / Benchmarks / Profiling
• Diffusion MRI analysis
• Software Architecture
• Anatomical MRI analysis
• Diffusion MRI analysis
• Surface-based statistics
• CAPS data structure specifications
• Project management
• Documentation
• Website
• Test / Benchmarks / Profiling
• Anatomical MRI analysis
• PET data analysis
• Machine learning
• Data converters (ADNI)
• Test / Benchmarks / Profiling
• Anatomical MRI analysis
• PET data analysis
• Machine learning
• Data converters (ADNI)
• Test / Benchmarks / Profiling
ARAMIS Lab is a pluridisciplinary group bringing together methodological researchers (computer science, applied mathematics) and medical experts (neurology, medical imaging).
ICM
Équipe Aramis, 3eme étage
Hôpital de la Pitié-Salpêtrière
47, boulevard de l’hôpital
75013 Paris
France
